| 碩士 | 學制 |
| Master of Applied Science in Agricultural Systems | Years of Study: 2 |
| Master in Biology | Years of Study: 2 |
| Master in Physics [non-thesis] | Years of Study: 2 |
| Master in Psychology [non-thesis] | Years of Study: 2 |
| Master of Arts Major in Anthropology [non-thesis] | Years of Study: 2 |
| Master of Arts in English Major in Creative Writing | Years of Study: 2 |
| Master of Arts in English Major in English Language Studies | Years of Study: 2 |
| Master of Arts in English Major in Literary Studies | Years of Study: 2 |
| Master of Arts in English Major in Teaching English to Speakers of Other Languages | Years of Study: 2 |
| Master of Arts in English [non-thesis] | Years of Study: 2 |
| Master of Arts in History [thesis and non-thesis] | Years of Study: 2 |
| Master of Arts in Philosophy | Years of Study: 2 |
| Master of Arts in Psychology Major in Counseling Psychology | Years of Study: 2 |
| Master of Arts in Psychology Major in Industrial / Organizational Psychology | Years of Study: 2 |
| Master of Arts in Psychology Major in Social & Community Psychology | Years of Study: 2 |
| Master of Arts in Psychology [non-thesis] | Years of Study: 2 |
| Master of Arts in Science Teaching Physics | Years of Study: 2 |
| Master of Arts Major in Sociology [non-thesis] | Years of Study: 2 |
| Master of Arts in Teaching Major in Mathematics | Years of Study: 2 |
| Master of Arts Major in Anthropology | Years of Study: 2 |
| Master of Arts Major in Extension Administration [MAREXA] | Years of Study: 2 |
| Master of Arts Major in Filipino | Years of Study: 2 |
| Master of Arts Major in Sociology | Years of Study: 2 |
| Master of Science in Biology | Years of Study: 2 |
| Master of Science in Mathematics | Years of Study: 2 |
| Master of Science in Physics | Years of Study: 2 |
| Master of Science Major in Social Work | Years of Study: 2 |
| Master in Business Administration | Years of Study: 2 |
| Master in Information Systems | Years of Study: 2 |
| Master of Arts in Education Major in Educational Management | Years of Study: 2 |
| Master of Arts in Education Major in English Teaching in Elementary and High School | Years of Study: 2 |
| Master of Arts in Education Major in Guidance and Counseling | Years of Study: 2 |
| Master of Engineering (with specialization in Civil Engineering, Electrical Engineering, Computer Engineering, Mechanical Engineering) | Years of Study: 2 |
| Master of Science in Nursing Major in Psychiatric-Mental Nursing | Years of Study: 2 |
| Master of Science in Nursing Major in Nursing Administration | Years of Study: 2 |
| Master of Science in Nursing Major in Family Nursing Practice | Years of Study: 2 |
| Master of Science in Nursing Major in Community Health Nursing | Years of Study: 2 |
| Master of Science in Nursing Major in Adult Health | Years of Study: 2 |
| Master in Nursing Major in Public Health Nursing [non-thesis] | Years of Study: 2 |
| Master in Nursing Major in Psychiatric-Mental Health Nursing [non-thesis] | Years of Study: 2 |
| Master in Nursing Major in Family Nursing Practice [non-thesis] | Years of Study: 2 |
| Master in Nursing Major in Adult Health [non-thesis] | Years of Study: 2 |
| Master in Nursing Major in Administration [non-thesis] | Years of Study: 2 |
| Master of Music Major in Music Education | Years of Study: 2 |
| Master of Music Major in Instrument Conducting | Years of Study: 2 |
| Master of Music Major in Ethnomusicology | Years of Study: 2 |
| Master of Music Major in Choral Conducting | Years of Study: 2 |
| Master of Arts in Peace Studies | Years of Study: 4 |
| Master of Divinity Major in Biblical Studies [thesis track] | Years of Study: 2 |
| Master of Divinity Major in Christian Education [thesis track] | Years of Study: 2 |
| Master of Divinity Major in Pastoral Ministry [non-thesis] | Years of Study: 4 |
| Master of Divinity Major in Pastoral Ministry [thesis track] | Years of Study: 2 |
| Master of Divinity Major in Spiritual Care / CPE [thesis track] | Years of Study: 2 |
| Master of Divinity Major in Systematic Theology [thesis track] | Years of Study: 2 |
| Master of Theology in Mission Studies [thesis track] | Years of Study: 2 |
| Master of Theology Major in Mission Studies |
|
| Master of Theology Major in Systematic Theology |
|
| Certificate in Coastal Resource Management | Years of Study: 2 |
| Diploma in Coastal Resource Management |
|
| Master of Research in Marine Ecosystems and Governance and Tropical Biological Oceanography (Double Degree Program) | Years of Study: 2 |
| Master of Science in Coastal Resource Management | Years of Study: 2 |
| Master of Science in Environmental Policy | Years of Study: 2 |
| Master of Science in Environmental Science | Years of Study: 2 |
| Master of Science in Marine Biology | Years of Study: 2 |
| Master in Environmental Governance | Years of Study: 2 |
| Master in Public Administration [specializing in Fiscal Administration] | Years of Study: 2 |
| Master of Arts in Hospital Administration | Years of Study: 2 |
| Master of Public Administration [specializing in Local Governance] | Years of Study: 2 |
| Master of Public Health | Years of Study: 2 |
